DESIGNING HIGHLY MULTIPLEX PCR PRIMER SETS WITH SIMULATED ANNEALING DESIGN USING DIMER LIKELIHOOD ESTIMATION (SADDLE)

Designing highly multiplex PCR primer sets with Simulated Annealing Design using Dimer Likelihood Estimation (SADDLE)

Designing highly multiplex PCR primer sets with Simulated Annealing Design using Dimer Likelihood Estimation (SADDLE)

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The design of highly multiplex PCR primers to amplify and enrich many different DNA Jacket sequences is increasing in biomedical importance as new mutations and pathogens are identified.The authors present and experimentally validate Simulated Annealing Design using Dimer Likelihood Estimation (SADDLE), a stochastic algorithm for design of highly multiplex PCR primer sets Batting that minimize primer dimer formation.

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